TSS: Rfhg 239551.1: Difference between revisions

Revision as of 07:07, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_239551.1
Species:	human
Chr:	chrX

Start:	136767870
End:	136767908
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D4315030,EH38E2770757)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001306177.2:55
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	AK299861:370 AK295709:478 view more...

Gene_name:	ARHGEF6
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-74
Nearest PromoterID:	NM_001306177
Entrez ID:	9459
Nearest Unigene:	Hs.522795
Nearest Refseq:	NM_004840
Nearest Ensembl:	ENSG00000129675
Gene Name:	ARHGEF6
Gene Alias:	COOL2\|Cool-2\|MRX46\|PIXA\|alpha-PIX\|alphaPIX
Gene Type:	protein-coding
CpG%:	0.052632
GC%:	0.641026
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001306177.2:55 AK299861:370 AK295709:478
 |annotation=promoter-TSS (NM_001306177)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001306177
 |nearest_refseq=NM_004840
+|nearest_transcripts=AK299861:370 AK295709:478
 |nearest_unigene=Hs.522795
 |peak_score=1