TSS: Rfhg 240764.1: Difference between revisions

Revision as of 07:30, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_240764.1
Species:	human
Chr:	chrY

Start:	3002986
End:	3002987
Strand:	+

Source datasets

PRJDB5282

Protocol

C1CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4323408,EH38E2774842)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NR_046502.1:9
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000425031.1:11 ENST00000653660.1:14 ENST00000655607.1:-40 ENST00000444263.6:-92 ENST00000652068.1:-92 ENST00000651090.1:-92 ENST00000654222.1:-99 ENST00000665487.1:-99 view more...

Gene_name:	LINC00278
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-10
Nearest PromoterID:	NR_046502
Entrez ID:	100873962
Nearest Unigene:	Hs.267256
Nearest Refseq:	NR_046502
Nearest Ensembl:	ENSG00000231535
Gene Name:	LINC00278
Gene Alias:	NCRNA00278
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NR_046502.1:9 ENST00000425031.1:11 ENST00000653660.1:14 ENST00000655607.1:-40 ENST00000444263.6:-92 ENST00000652068.1:-92 ENST00000651090.1:-92 ENST00000654222.1:-99 ENST00000665487.1:-99
 |annotation=promoter-TSS (NR_144458)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_046502
 |nearest_refseq=NR_046502
+|nearest_transcripts=ENST00000425031.1:11 ENST00000653660.1:14 ENST00000655607.1:-40 ENST00000444263.6:-92 ENST00000652068.1:-92 ENST00000651090.1:-92 ENST00000654222.1:-99 ENST00000665487.1:-99
 |nearest_unigene=Hs.267256
 |peak_score=1