TSS: Rfhg 26279.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000327876.5:0 NM_022055.2:0 | |||
|annotation=promoter-TSS (NM_022055) | |annotation=promoter-TSS (NM_022055) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_022055 | |nearest_promoter_id=NM_022055 | ||
|nearest_refseq=NM_022055 | |nearest_refseq=NM_022055 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.591586 | |nearest_unigene=Hs.591586 | ||
|peak_score=1 | |peak_score=1 | ||
| Line 33: | Line 35: | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000327876.5 | |transcript_name=ENST00000327876.5 NM_022055.2 | ||
|tss_cluster_detected=1 | |tss_cluster_detected=1 | ||
|tss_id=rfhg_26279.1 | |tss_id=rfhg_26279.1 | ||
Revision as of 08:14, 12 November 2024
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3120431,EH38E1996003) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -618 |
|---|---|
| Nearest PromoterID: | NM_022055 |
| Entrez ID: | 56660 |
| Nearest Unigene: | Hs.591586 |
| Nearest Refseq: | NM_022055 |
| Nearest Ensembl: | ENSG00000184261 |
| Gene Name: | KCNK12 |
| Gene Alias: | K2p12.1|THIK-2|THIK2 |
| Gene Type: | protein-coding |
| CpG%: | 0.114943 |
| GC%: | 0.727273 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.