TSS: Rfhg 29120.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000605125.5:0 ENST00000337109.9:0 ENST00000409180.1:0 NM_001363782.1:0 NM_145644.3:0 NM_016622.4:0 LF384120:0 MA619697:0 BC020651:0 AK314577:0 AK314555:0 AK074352:0 AF208849:0 AL832982:0 CU676602:0 HQ447678:0 KJ898884:0 ENST00000254644.12:-72 LF362904:114 MA598481:114
|annotation=promoter-TSS (NM_145644)
|annotation=promoter-TSS (NM_145644)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_016622
|nearest_promoter_id=NM_016622
|nearest_refseq=NM_016622
|nearest_refseq=NM_016622
|nearest_transcripts=ENST00000254644.12:-72 LF362904:114 MA598481:114
|nearest_unigene=Hs.433439
|nearest_unigene=Hs.433439
|peak_score=1
|peak_score=1
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|strand=+
|strand=+
|tata_box=24(GCTTTTAAACCC,+,0.00)
|tata_box=24(GCTTTTAAACCC,+,0.00)
|transcript_name=ENST00000605125.5 ENST00000337109.9 ENST00000409180.1 BC020651 AK314577 AK314555 AK074352 AF208849 AL832982 CU676602 HQ447678
|transcript_name=ENST00000605125.5 ENST00000337109.9 ENST00000409180.1 NM_001363782.1 NM_145644.3 NM_016622.4 LF384120 MA619697 BC020651 AK314577 AK314555 AK074352 AF208849 AL832982 CU676602 HQ447678 KJ898884
|tss_cluster_detected=15
|tss_cluster_detected=15
|tss_id=rfhg_29120.1
|tss_id=rfhg_29120.1

Revision as of 09:06, 12 November 2024

Basic information about the TSS

TSS ID:rfhg_29120.1
TSS ID(Version3):hg_21294.1
Species:human
Chr:chr2
Start:86199427
End:86199491
Strand:+
Source datasetsFANTOM5|EPD|DBTSS|DRA000914|PRJDB5282|DRA013844|PRJNA401781
|PRJNA597322|PRJNA548673|PRJNA615891|PRJNA4843412
ProtocolCAGE|TSS_database|TSS-seq|C1CAGE|oligo_capping|STRIPE-seq
|RAMPAGE|ReCappable-seq|SLIC_CAGE|NETCAGE|TIF-seq2
TSS cluster detected*15

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D3149555,EH38E2014487)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000605125.5:0
ENST00000337109.9:0
ENST00000409180.1:0
NM_001363782.1:0
NM_145644.3:0
NM_016622.4:0
LF384120:0
MA619697:0
BC020651:0
AK314577:0
AK314555:0
AK074352:0
AF208849:0
AL832982:0
CU676602:0
HQ447678:0
KJ898884:0
GeneID:51318
HGNC/MGI_ID:HGNC:14489
UniProt_ID:D3YTC1 Q9NZE8 S4R348
Nearer transcript ids and distances:
  • ENST00000254644.12:-72
  • LF362904:114
  • MA598481:114
view more...
Gene_name:MRPL35
Gene_symbol:MRPL35
Gene_synonyms:
Gene_source:HGNC:14489



TATA-Box annotation

Distance to TSS:2
Nearest PromoterID:NM_016622
Entrez ID:51318
Nearest Unigene:Hs.433439
Nearest Refseq:NM_016622
Nearest Ensembl:ENSG00000132313
Gene Name:MRPL35
Gene Alias:L35mt|MRP-L35
Gene Type:protein-coding
CpG%:0.062500
GC%:0.507692
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):24(GCTTTTAAACCC,+,0.00)



TSS expression

Expression data not found.
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