TSS: Rfhg 30812.1: Difference between revisions

Revision as of 09:36, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_30812.1
Species:	human
Chr:	chr2

Start:	112812168
End:	112812195
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D3165679,EH38E2025600)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	IL1B
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	24598
Nearest PromoterID:	NM_000576
Entrez ID:	3553
Nearest Unigene:	Hs.126256
Nearest Refseq:	NM_000576
Nearest Ensembl:	ENSG00000125538
Gene Name:	IL1B
Gene Alias:	IL-1\|IL1-BETA\|IL1F2
Gene Type:	protein-coding
CpG%:	0.037037
GC%:	0.464286
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=Intergenic
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_000576
 |nearest_refseq=NM_000576
+|nearest_transcripts=
 |nearest_unigene=Hs.126256
 |peak_score=1