TSS: Rfhg 31756.1: Difference between revisions

Revision as of 09:52, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_31756.1
Species:	human
Chr:	chr2

Start:	127869538
End:	127869538
Strand:	-

Source datasets

PRJDB5282

Protocol

C1CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AK095871:25
GeneID:	83607
HGNC/MGI_ID:	HGNC:28658
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	POLR2D
Gene_symbol:	AMMECR1L
Gene_synonyms:	MGC4268
Gene_source:	HGNC:28658

TATA-Box annotation

Distance to TSS:	-11383
Nearest PromoterID:	NM_004805
Entrez ID:	5433
Nearest Unigene:	Hs.715348
Nearest Refseq:	NM_004805
Nearest Ensembl:	ENSG00000144231
Gene Name:	POLR2D
Gene Alias:	HSRBP4\|HSRPB4\|RBP4\|RPB16
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=AK095871:25
 |annotation=exon (NM_031445, exon 6 of 8)
 |ccre_category=N
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_004805
 |nearest_refseq=NM_004805
+|nearest_transcripts=
 |nearest_unigene=Hs.715348
 |peak_score=1