TSS: Rfhg 32060.1: Difference between revisions

Revision as of 09:56, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_32060.1
Species:	human
Chr:	chr2

Start:	132347468
End:	132347480
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D3179335,EH38E2033390)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000666693.1:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	AK096920:-66

Gene_name:	FAM201B
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-5193
Nearest PromoterID:	NR_135203
Entrez ID:	339742
Nearest Unigene:	Hs.98178
Nearest Refseq:	NR_135203
Nearest Ensembl:
Gene Name:	FAM201B
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.083333
GC%:	0.538462
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000666693.1:0 AK096920:-66
 |annotation=Intergenic
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_135203
 |nearest_refseq=NR_135203
+|nearest_transcripts=AK096920:-66
 |nearest_unigene=Hs.98178
 |peak_score=1