TSS: Rfhg 34841.1: Difference between revisions

Revision as of 10:46, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_34841.1
Species:	human
Chr:	chr2

Start:	173049601
End:	173049611
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D3210023,EH38E2052164)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	MAP3K20
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-26240
Nearest PromoterID:	NM_133646
Entrez ID:	51776
Nearest Unigene:	Hs.444451
Nearest Refseq:	NM_016653
Nearest Ensembl:	ENSG00000091436
Gene Name:	MAP3K20
Gene Alias:	AZK\|CNM6\|MLK7\|MLT\|MLTK\|MLTKalpha\|MLTKbeta\|MRK\|SFMMP\|ZAK\|mlklak\|pk
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.545455
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_001282901, intron 24 of 24)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_133646
 |nearest_refseq=NM_016653
+|nearest_transcripts=
 |nearest_unigene=Hs.444451
 |peak_score=1