TSS: Rfhg 35932.1: Difference between revisions

Revision as of 11:06, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_35932.1
Species:	human
Chr:	chr2

Start:	178800426
End:	178800443
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D3215088,EH38E2055754)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	TTN
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	6989
Nearest PromoterID:	NM_133379
Entrez ID:	7273
Nearest Unigene:	Hs.134602
Nearest Refseq:	NM_003319
Nearest Ensembl:	ENSG00000155657
Gene Name:	TTN
Gene Alias:	CMD1G\|CMH9\|CMPD4\|EOMFC\|HMERF\|LGMD2J\|LGMDR10\|MYLK5\|SALMY\|TMD
Gene Type:	protein-coding
CpG%:	0.058824
GC%:	0.444444
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=exon (NM_133432, exon 4 of 192)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_133379
 |nearest_refseq=NM_003319
+|nearest_transcripts=
 |nearest_unigene=Hs.134602
 |peak_score=1