TSS: Rfhg 37171.1: Difference between revisions

Revision as of 11:29, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_37171.1
Species:	human
Chr:	chr2

Start:	199459417
End:	199459428
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D3229866,EH38E2064782)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	SATB2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-1483
Nearest PromoterID:	NM_001172509
Entrez ID:	23314
Nearest Unigene:	Hs.516617
Nearest Refseq:	NM_015265
Nearest Ensembl:	ENSG00000119042
Gene Name:	SATB2
Gene Alias:	GLSS
Gene Type:	protein-coding
CpG%:	0.090909
GC%:	0.583333
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_015265, intron 2 of 11)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001172509
 |nearest_refseq=NM_015265
+|nearest_transcripts=
 |nearest_unigene=Hs.516617
 |peak_score=1