TSS: Rfhg 37265.1: Difference between revisions

Revision as of 11:31, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_37265.1
Species:	human
Chr:	chr2

Start:	200695361
End:	200695365
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D3230968,EH38E2065556)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	AOX3P-AOX2P
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-360
Nearest PromoterID:	NR_135012
Entrez ID:	107161151
Nearest Unigene:	Hs.148269
Nearest Refseq:	NR_135011
Nearest Ensembl:
Gene Name:	AOX3P-AOX2P
Gene Alias:	AOX3/AOX3L1
Gene Type:	pseudo
CpG%:	0.000000
GC%:	0.600000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=promoter-TSS (NR_135011)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_135012
 |nearest_refseq=NR_135011
+|nearest_transcripts=
 |nearest_unigene=Hs.148269
 |peak_score=1