TSS: Rfhg 39241.1: Difference between revisions

Revision as of 12:08, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_39241.1
Species:	human
Chr:	chr2

Start:	219279816
End:	219279830
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D3246170,EH38E2076036)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	DNAJB2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	457
Nearest PromoterID:	NM_006736
Entrez ID:	3300
Nearest Unigene:	Hs.77768
Nearest Refseq:	NM_006736
Nearest Ensembl:	ENSG00000135924
Gene Name:	DNAJB2
Gene Alias:	CMT2T\|DSMA5\|HSJ-1\|HSJ1\|HSPF3
Gene Type:	protein-coding
CpG%:	0.071429
GC%:	0.533333
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=5' UTR (NM_006736, exon 2 of 9)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_006736
 |nearest_refseq=NM_006736
+|nearest_transcripts=
 |nearest_unigene=Hs.77768
 |peak_score=1