TSS: Rfhg 40061.1: Difference between revisions

Revision as of 12:24, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_40061.1
Species:	human
Chr:	chr2

Start:	229939790
End:	229939804
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D3255082,EH38E2081752)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	TRIP12
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-16617
Nearest PromoterID:	NM_001348335
Entrez ID:	9320
Nearest Unigene:	Hs.572642
Nearest Refseq:	NM_004238
Nearest Ensembl:	ENSG00000153827
Gene Name:	TRIP12
Gene Alias:	MRD49\|TRIP-12\|ULF
Gene Type:	protein-coding
CpG%:	0.142857
GC%:	0.600000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_174899, intron 1 of 3)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001348335
 |nearest_refseq=NM_004238
+|nearest_transcripts=
 |nearest_unigene=Hs.572642
 |peak_score=1