TSS: Rfhg 44742.1: Difference between revisions

Revision as of 13:49, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_44742.1
Species:	human
Chr:	chr3

Start:	46558623
End:	46558635
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D3422568,EH38E2198279)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000684015.1:-83
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LRRC2-AS1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	1231
Nearest PromoterID:	NR_073385
Entrez ID:	83598
Nearest Unigene:	Hs.570630
Nearest Refseq:	NR_073385
Nearest Ensembl:	ENSG00000268324
Gene Name:	LRRC2-AS1
Gene Alias:	LUZP3\|LUZP3P\|LUZPP1
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.538462
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000684015.1:-83
 |annotation=intron (NR_073385, intron 2 of 2)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_073385
 |nearest_refseq=NR_073385
+|nearest_transcripts=
 |nearest_unigene=Hs.570630
 |peak_score=1