TSS: Rfhg 45542.1: Difference between revisions

Revision as of 14:04, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_45542.1
Species:	human
Chr:	chr3

Start:	50620695
End:	50620700
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D3426597,EH38E2201406)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	MAPKAPK3
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	3546
Nearest PromoterID:	NM_001243925
Entrez ID:	7867
Nearest Unigene:	Hs.234521
Nearest Refseq:	NM_004635
Nearest Ensembl:	ENSG00000114738
Gene Name:	MAPKAPK3
Gene Alias:	3PK\|MAPKAP-K3\|MAPKAP3\|MAPKAPK-3\|MDPT3\|MK-3
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_004635, intron 2 of 10)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001243925
 |nearest_refseq=NM_004635
+|nearest_transcripts=
 |nearest_unigene=Hs.234521
 |peak_score=1