TSS: Rfhg 45743.1: Difference between revisions

Revision as of 14:08, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_45743.1
Species:	human
Chr:	chr3

Start:	52406335
End:	52406345
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D3428000,EH38E2202340)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF333770:118 MA569347:118
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	LF333769:-302 MA569346:-302 view more...

Gene_name:	BAP1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	3668
Nearest PromoterID:	NM_004656
Entrez ID:	8314
Nearest Unigene:	Hs.106674
Nearest Refseq:	NM_004656
Nearest Ensembl:	ENSG00000163930
Gene Name:	BAP1
Gene Alias:	HUCEP-13\|UCHL2\|hucep-6
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.545455
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF333770:118 MA569347:118 LF333769:-302 MA569346:-302
 |annotation=exon (NM_004656, exon 9 of 17)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_004656
 |nearest_refseq=NM_004656
+|nearest_transcripts=LF333769:-302 MA569346:-302
 |nearest_unigene=Hs.106674
 |peak_score=1