TSS: Rfhg 48479.1: Difference between revisions

Revision as of 14:58, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_48479.1
Species:	human
Chr:	chr3

Start:	111595319
End:	111595329
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D3468217,EH38E2226597)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	ZBED2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	22
Nearest PromoterID:	NM_024508
Entrez ID:	79413
Nearest Unigene:	Hs.136912
Nearest Refseq:	NM_024508
Nearest Ensembl:	ENSG00000177494
Gene Name:	ZBED2
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.454545
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=promoter-TSS (NM_024508)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_024508
 |nearest_refseq=NM_024508
+|nearest_transcripts=
 |nearest_unigene=Hs.136912
 |peak_score=1