TSS: Rfhg 50808.1: Difference between revisions

Revision as of 15:42, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_50808.1
Species:	human
Chr:	chr3

Start:	139389749
End:	139389759
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3491516,EH38E2242450)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000653359.1:2
GeneID:	100507291
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000662234.1:26 ENST00000658348.1:41 NR_121608.1:44 NR_121609.1:44 ENST00000504670.6:56 ENST00000507362.5:59 ENST00000512622.1:71 ENST00000510068.5:79 ENST00000515247.5:81 ENST00000660194.1:86 ENST00000514729.1:117 ENST00000655667.1:117 ENST00000661884.1:240 view more...

Gene_name:	LOC100507291
Gene_symbol:	COPB2-DT
Gene_synonyms:
Gene_source:	EntrezGene:100507291

TATA-Box annotation

Distance to TSS:	-49
Nearest PromoterID:	NR_121608
Entrez ID:	100507291
Nearest Unigene:	Hs.97661
Nearest Refseq:	NR_121608
Nearest Ensembl:	ENSG00000248932
Gene Name:	LOC100507291
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.454545
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

Property "Nearest transcripts" (as page type) with input value "ENST00000662234.1:26 ENST00000658348.1:41 NR_121608.1:44 NR_121609.1:44 ENST00000504670.6:56 ENST00000507362.5:59 ENST00000512622.1:71 ENST00000510068.5:79 ENST00000515247.5:81 ENST00000660194.1:86 ENST00000514729.1:117 ENST00000655667.1:117 ENST00000661884.1:240" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000653359.1:2 ENST00000662234.1:26 ENST00000658348.1:41 NR_121608.1:44 NR_121609.1:44 ENST00000504670.6:56 ENST00000507362.5:59 ENST00000512622.1:71 ENST00000510068.5:79 ENST00000515247.5:81 ENST00000660194.1:86 ENST00000514729.1:117 ENST00000655667.1:117 ENST00000661884.1:240
 |annotation=promoter-TSS (NM_004766)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_121608
 |nearest_refseq=NR_121608
+|nearest_transcripts=ENST00000662234.1:26 ENST00000658348.1:41 NR_121608.1:44 NR_121609.1:44 ENST00000504670.6:56 ENST00000507362.5:59 ENST00000512622.1:71 ENST00000510068.5:79 ENST00000515247.5:81 ENST00000660194.1:86 ENST00000514729.1:117 ENST00000655667.1:117 ENST00000661884.1:240
 |nearest_unigene=Hs.97661
 |peak_score=1