TSS: Rfhg 53006.1: Difference between revisions

Revision as of 16:24, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_53006.1
Species:	human
Chr:	chr3

Start:	173397548
End:	173397571
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D3517334,EH38E2258879)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001365935.2:173 NM_001365931.2:173 NM_001365925.2:173 NM_001365932.2:173 NM_001365926.2:173 NM_014932.5:173
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000413821.1:209 ENST00000482120.1:211 view more...

Gene_name:	NLGN1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-185
Nearest PromoterID:	NM_001365932
Entrez ID:	22871
Nearest Unigene:	Hs.478289
Nearest Refseq:	NM_014932
Nearest Ensembl:	ENSG00000169760
Gene Name:	NLGN1
Gene Alias:	NL1
Gene Type:	protein-coding
CpG%:	0.043478
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001365935.2:173 NM_001365931.2:173 NM_001365925.2:173 NM_001365932.2:173 NM_001365926.2:173 NM_014932.5:173 ENST00000413821.1:209 ENST00000482120.1:211
 |annotation=promoter-TSS (NM_001365935)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001365932
 |nearest_refseq=NM_014932
+|nearest_transcripts=ENST00000413821.1:209 ENST00000482120.1:211
 |nearest_unigene=Hs.478289
 |peak_score=1