TSS: Rfhg 53290.1: Difference between revisions

Revision as of 16:29, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_53290.1
Species:	human
Chr:	chr3

Start:	181699773
End:	181699781
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3523521,EH38E2262635)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	SOX2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-12148
Nearest PromoterID:	NM_003106
Entrez ID:	6657
Nearest Unigene:	Hs.518438
Nearest Refseq:	NM_003106
Nearest Ensembl:	ENSG00000181449
Gene Name:	SOX2
Gene Alias:	ANOP3\|MCOPS3
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.444444
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=non-coding (NR_004053, exon 3 of 5)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_003106
 |nearest_refseq=NM_003106
+|nearest_transcripts=
 |nearest_unigene=Hs.518438
 |peak_score=1