TSS: Rfhg 61984.1: Difference between revisions

Revision as of 19:12, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_61984.1
Species:	human
Chr:	chr4

Start:	127783399
End:	127783399
Strand:	+

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3626049,EH38E2326651)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001317382.2:124
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000505726.1:150 AK302115:150 view more...

Gene_name:	HSPA4L
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-124
Nearest PromoterID:	NM_001317382
Entrez ID:	22824
Nearest Unigene:	Hs.135554
Nearest Refseq:	NM_014278
Nearest Ensembl:	ENSG00000164070
Gene Name:	HSPA4L
Gene Alias:	APG-1\|HSPH3\|Osp94
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001317382.2:124 ENST00000505726.1:150 AK302115:150
 |annotation=promoter-TSS (NM_001317382)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001317382
 |nearest_refseq=NM_014278
+|nearest_transcripts=ENST00000505726.1:150 AK302115:150
 |nearest_unigene=Hs.135554
 |peak_score=1