TSS: Rfhg 63628.1: Difference between revisions

Revision as of 19:43, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_63628.1
Species:	human
Chr:	chr4

Start:	158805758
End:	158805768
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D3647543,EH38E2339645)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001323916.2:71 NM_001366843.1:71
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000512986.5:326 BC016638:326 view more...

Gene_name:	FNIP2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-76
Nearest PromoterID:	NM_001323916
Entrez ID:	57600
Nearest Unigene:	Hs.652441
Nearest Refseq:	NM_020840
Nearest Ensembl:	ENSG00000052795
Gene Name:	FNIP2
Gene Alias:	FNIPL\|MAPO1
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.454545
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001323916.2:71 NM_001366843.1:71 ENST00000512986.5:326 BC016638:326
 |annotation=promoter-TSS (NM_001323916)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001323916
 |nearest_refseq=NM_020840
+|nearest_transcripts=ENST00000512986.5:326 BC016638:326
 |nearest_unigene=Hs.652441
 |peak_score=1