TSS: Rfhg 65254.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=
|annotation=Intergenic
|annotation=Intergenic
|ccre_category=DNase-H3K4me3
|ccre_category=DNase-H3K4me3
Line 25: Line 26:
|nearest_promoter_id=NM_001005217
|nearest_promoter_id=NM_001005217
|nearest_refseq=NM_001005217
|nearest_refseq=NM_001005217
|nearest_transcripts=
|nearest_unigene=Hs.626907
|nearest_unigene=Hs.626907
|peak_score=1
|peak_score=1

Revision as of 20:13, 12 November 2024

Basic information about the TSS

TSS ID:rfhg_65254.1
Species:human
Chr:chr4
Start:190018313
End:190018320
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:DNase-H3K4me3 (EH38D3668285,EH38E2351633)
Category:DNase-H3K4me3

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:FRG2
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation

    Distance to TSS:8941
    Nearest PromoterID:NM_001005217
    Entrez ID:448831
    Nearest Unigene:Hs.626907
    Nearest Refseq:NM_001005217
    Nearest Ensembl:ENSG00000205097
    Gene Name:FRG2
    Gene Alias:FRG2A
    Gene Type:protein-coding
    CpG%:0.000000
    GC%:0.750000
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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