TSS: Rfhg 70056.1: Difference between revisions

Revision as of 21:41, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_70056.1
Species:	human
Chr:	chr5

Start:	93584322
End:	93584341
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D3731726,EH38E2391534)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	NR2F1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	1109
Nearest PromoterID:	NM_005654
Entrez ID:	7025
Nearest Unigene:	Hs.519445
Nearest Refseq:	NM_005654
Nearest Ensembl:	ENSG00000175745
Gene Name:	NR2F1
Gene Alias:	BBOAS\|BBSOAS\|COUP-TFI\|COUPTF1\|EAR-3\|EAR3\|ERBAL3\|SVP44\|TCFCOUP1\|TFCOUP1
Gene Type:	protein-coding
CpG%:	0.315789
GC%:	0.950000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=5' UTR (NM_005654, exon 1 of 3)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_005654
 |nearest_refseq=NM_005654
+|nearest_transcripts=
 |nearest_unigene=Hs.519445
 |peak_score=1