TSS: Rfhg 71882.1: Difference between revisions

Revision as of 22:16, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_71882.1
Species:	human
Chr:	chr5

Start:	132422981
End:	132422990
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D3759603,EH38E2408500)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	C5orf56
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	12056
Nearest PromoterID:	NR_161242
Entrez ID:	441108
Nearest Unigene:	Hs.658288
Nearest Refseq:	NM_001013717
Nearest Ensembl:
Gene Name:	C5orf56
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.400000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NR_161242, intron 2 of 3)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_161242
 |nearest_refseq=NM_001013717
+|nearest_transcripts=
 |nearest_unigene=Hs.658288
 |peak_score=1