TSS: Rfhg 74666.1: Difference between revisions

Revision as of 23:06, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_74666.1
TSS ID(Version3):	hg_59727.1
Species:	human
Chr:	chr5

Start:	154199469
End:	154199514
Strand:	+

Source datasets

FANTOM5|PRJNA401781|PRJNA548673

Protocol

CAGE|ReCappable-seq

TSS cluster detected^*

4

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D3779461,EH38E2422929)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	GALNT10
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	8758
Nearest PromoterID:	NM_198321
Entrez ID:	55568
Nearest Unigene:	Hs.631797
Nearest Refseq:	NM_017540
Nearest Ensembl:	ENSG00000164574
Gene Name:	GALNT10
Gene Alias:	GALNACT10\|PPGALNACT10\|PPGANTASE10
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.478261
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_198321, intron 1 of 11)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_198321
 |nearest_refseq=NM_017540
+|nearest_transcripts=
 |nearest_unigene=Hs.631797
 |peak_score=1