TSS: Rfhg 76109.1: Difference between revisions

Revision as of 23:32, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_76109.1
TSS ID(Version3):	hg_229776.1
Species:	human
Chr:	chr5

Start:	176061147
End:	176061182
Strand:	+

Source datasets

FANTOM5|PRJNA548673

Protocol

CAGE|ReCappable-seq

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000511680.5:-25
GeneID:	202134
HGNC/MGI_ID:	HGNC:27323
UniProt_ID:
Nearer transcript ids and distances:	ENST00000512862.5:73 ENST00000514721.5:-424 BC128074:-424 ENST00000510151.5:-458 view more...

Gene_name:	LOC100996385
Gene_symbol:	FAM153B
Gene_synonyms:
Gene_source:	HGNC:27323

TATA-Box annotation

Distance to TSS:	891
Nearest PromoterID:	NR_103794
Entrez ID:	100996385
Nearest Unigene:	Hs.382347
Nearest Refseq:	NR_103794
Nearest Ensembl:	ENSG00000248469
Gene Name:	LOC100996385
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.085714
GC%:	0.694444
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000511680.5:-25 ENST00000512862.5:73 ENST00000514721.5:-424 BC128074:-424 ENST00000510151.5:-458
 |annotation=intron (NR_103794, intron 1 of 2)
 |ccre_category=N
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_103794
 |nearest_refseq=NR_103794
+|nearest_transcripts=ENST00000512862.5:73 ENST00000514721.5:-424 BC128074:-424 ENST00000510151.5:-458
 |nearest_unigene=Hs.382347
 |peak_score=1