TSS: Rfhg 79174.1: Difference between revisions

Revision as of 00:29, 13 November 2024

Basic information about the TSS

TSS ID:	rfhg_79174.1
Species:	human
Chr:	chr6

Start:	24936037
End:	24936076
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3825579,EH38E2454855)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	RIPOR2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-96
Nearest PromoterID:	NM_001286445
Entrez ID:	9750
Nearest Unigene:	Hs.559459
Nearest Refseq:	NM_014722
Nearest Ensembl:	ENSG00000111913
Gene Name:	RIPOR2
Gene Alias:	C6orf32\|DFNB104\|DIFF40\|DIFF48\|FAM65B\|MYONAP\|PL48
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.400000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=promoter-TSS (NM_001286445)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001286445
 |nearest_refseq=NM_014722
+|nearest_transcripts=
 |nearest_unigene=Hs.559459
 |peak_score=1