TSS: Rfhg 81181.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=DQ284432:0 AF291675:0 AJ297586:0 AY961068:0 AY961075:0 HG974573:0 HG974575:0 HG974603:0 HM067845:0 HM067846:0 M30179:0 L02545:0 CU678949:0 EU375850:0 M11161:0 X99895:0 U84892:0 DQ284435:0 AJ697892:0 AJ697893:0 AJ297582:0 AJ297585:0 AJ297587:0 AJ302075:0 AY626551:0 AY770514:0 AY961062:0 AY961063:0 AY961064:0 AY961065:0 AY961066:0 AY961067:0 AY961069:0 AY961070:0 AY961071:0 AY961072:0 AY961073:0 AY961074:0 AY961076:0 AY961077:0 AY961078:0 DQ002917:0 DQ090958:0 GQ891551:0 HG974571:0 HG974572:0 HG974574:0 HG974576:0 HG974577:0 HG974578:0 HG974579:0 HG974580:0 HG974582:0 HG974583:0 HG974584:0 HG974585:0 HG974586:0 HG974587:0 HG974588:0 HG974589:0 HG974590:0 HG974591:0 HG974592:0 HG974595:0 HG974596:0 HG974597:0 HG974598:0 HG974599:0 HG974600:0 HG974601:0 HG974602:0 HG974604:0 HG974605:0 HM067843:0 HM067844:0 HM067847:0 HM067848:0 HM067849:0 HM067850:0 HM067852:0 HM067853:0 HM067854:0 HM067855:0 HM067856:0 HM067857:0 HM067858:0 HM067859:0 HM067860:0 HM067861:0 HM067862:0 HM067863:0 HM627215:0 LK391771:0 LK391772:0 LK391773:0 LK391774:0 LK391775:0 LK391776:0 LK391777:0 LK391778:0 LK391779:0 LK391780:0 LK391781:0 LK391782:0 LK391783:0 LK391784:0 LM611904:0 LM611905:0 LN623522:0 LN830949:0 LN854575:0 LN854576:0 MH049486:0 U95989:0 MK651797:0 HQ447401:0 KJ891349:0 KJ901488:0 KJ901489:0 HQ447185:0 KJ901490:0 KJ905776:0 KJ905777:0 KJ534866:0 AB528619:0 AJ297583:0 AJ297584:0 AY935719:0 CU689080:0 BC171883:-5 M11867:-8 M20504:-14 M27635:-16 M28583:-18 AF490771:18 AK226058:-19 L76133:-19 U65585:-19 BC033827:-22 M20430:-22 AB062112:-23 M26038:-24 BC007920:-25 M28584:28 M30180:28 M33600:-30 BC108922:-34 X12544:-37 AK291499:-41 X03069:-41 AK225690:-42 AK290388:-42 AK225683:-42 BC031023:-42 BC008403:-42 AK289463:-42 X99896:44 D86415:65 U17381:72 U17379:72 AK291987:-73 LP895650:-73 U17380:74 AK293020:-83 ENST00000360004.5:-85 NM_002124.4:-85 LP896422:-85 M16957:86 M16959:86 M17378:86 AF010142:86 M16958:86
|annotation=promoter-TSS (NM_002124)
|annotation=promoter-TSS (NM_002124)
|ccre_category=PLS
|ccre_category=PLS
Line 25: Line 26:
|nearest_promoter_id=NM_001243965
|nearest_promoter_id=NM_001243965
|nearest_refseq=NM_002124
|nearest_refseq=NM_002124
|nearest_transcripts=BC171883:-5 M11867:-8 M20504:-14 M27635:-16 M28583:-18 AF490771:18 AK226058:-19 L76133:-19 U65585:-19 BC033827:-22 M20430:-22 AB062112:-23 M26038:-24 BC007920:-25 M28584:28 M30180:28 M33600:-30 BC108922:-34 X12544:-37 AK291499:-41 X03069:-41 AK225690:-42 AK290388:-42 AK225683:-42 BC031023:-42 BC008403:-42 AK289463:-42 X99896:44 D86415:65 U17381:72 U17379:72 AK291987:-73 LP895650:-73 U17380:74 AK293020:-83 ENST00000360004.5:-85 NM_002124.4:-85 LP896422:-85 M16957:86 M16959:86 M17378:86 AF010142:86 M16958:86
|nearest_unigene=Hs.534322
|nearest_unigene=Hs.534322
|peak_score=1
|peak_score=1
Line 33: Line 35:
|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=DQ284432 AF291675 AJ297586 AY961068 AY961075 HG974573 HG974575 HG974603 HM067845 HM067846 M30179 L02545 CU678949 EU375850 M11161 X99895 U84892 DQ284435 AJ697892 AJ697893 AJ297582 AJ297585 AJ297587 AJ302075 AY626551 AY770514 AY961062 AY961063 AY961064 AY961065 AY961066 AY961067 AY961069 AY961070 AY961071 AY961072 AY961073 AY961074 AY961076 AY961077 AY961078 DQ002917 DQ090958 GQ891551 HG974571 HG974572 HG974574 HG974576 HG974577 HG974578 HG974579 HG974580 HG974582 HG974583 HG974584 HG974585 HG974586 HG974587 HG974588 HG974589 HG974590 HG974591 HG974592 HG974595 HG974596 HG974597 HG974598 HG974599 HG974600 HG974601 HG974602 HG974604 HG974605 HM067843 HM067844 HM067847 HM067848 HM067849 HM067850 HM067852 HM067853 HM067854 HM067855 HM067856 HM067857 HM067858 HM067859 HM067860 HM067861 HM067862 HM067863 LK391771 LK391772 LK391773 LK391774 LK391775 LK391776 LK391777 LK391778 LK391779 LK391780 LK391781 LK391782 LK391783 LK391784 LM611904 LM611905 LN623522 LN830949 LN854575 LN854576 HQ447401 HQ447185 KJ534866 AB528619 AJ297583 AJ297584 AY935719 CU689080
|transcript_name=DQ284432 AF291675 AJ297586 AY961068 AY961075 HG974573 HG974575 HG974603 HM067845 HM067846 M30179 L02545 CU678949 EU375850 M11161 X99895 U84892 DQ284435 AJ697892 AJ697893 AJ297582 AJ297585 AJ297587 AJ302075 AY626551 AY770514 AY961062 AY961063 AY961064 AY961065 AY961066 AY961067 AY961069 AY961070 AY961071 AY961072 AY961073 AY961074 AY961076 AY961077 AY961078 DQ002917 DQ090958 GQ891551 HG974571 HG974572 HG974574 HG974576 HG974577 HG974578 HG974579 HG974580 HG974582 HG974583 HG974584 HG974585 HG974586 HG974587 HG974588 HG974589 HG974590 HG974591 HG974592 HG974595 HG974596 HG974597 HG974598 HG974599 HG974600 HG974601 HG974602 HG974604 HG974605 HM067843 HM067844 HM067847 HM067848 HM067849 HM067850 HM067852 HM067853 HM067854 HM067855 HM067856 HM067857 HM067858 HM067859 HM067860 HM067861 HM067862 HM067863 HM627215 LK391771 LK391772 LK391773 LK391774 LK391775 LK391776 LK391777 LK391778 LK391779 LK391780 LK391781 LK391782 LK391783 LK391784 LM611904 LM611905 LN623522 LN830949 LN854575 LN854576 MH049486 U95989 MK651797 HQ447401 KJ891349 KJ901488 KJ901489 HQ447185 KJ901490 KJ905776 KJ905777 KJ534866 AB528619 AJ297583 AJ297584 AY935719 CU689080
|tss_cluster_detected=1
|tss_cluster_detected=1
|tss_id=rfhg_81181.1
|tss_id=rfhg_81181.1

Revision as of 01:06, 13 November 2024

Basic information about the TSS

TSS ID:rfhg_81181.1
Species:human
Chr:chr6
Start:32589741
End:32589763
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS (EH38D3832375,EH38E2460039)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:DQ284432:0
AF291675:0
AJ297586:0
AY961068:0
AY961075:0
HG974573:0
HG974575:0
HG974603:0
HM067845:0
HM067846:0
M30179:0
L02545:0
CU678949:0
EU375850:0
M11161:0
X99895:0
U84892:0
DQ284435:0
AJ697892:0
AJ697893:0
AJ297582:0
AJ297585:0
AJ297587:0
AJ302075:0
AY626551:0
AY770514:0
AY961062:0
AY961063:0
AY961064:0
AY961065:0
AY961066:0
AY961067:0
AY961069:0
AY961070:0
AY961071:0
AY961072:0
AY961073:0
AY961074:0
AY961076:0
AY961077:0
AY961078:0
DQ002917:0
DQ090958:0
GQ891551:0
HG974571:0
HG974572:0
HG974574:0
HG974576:0
HG974577:0
HG974578:0
HG974579:0
HG974580:0
HG974582:0
HG974583:0
HG974584:0
HG974585:0
HG974586:0
HG974587:0
HG974588:0
HG974589:0
HG974590:0
HG974591:0
HG974592:0
HG974595:0
HG974596:0
HG974597:0
HG974598:0
HG974599:0
HG974600:0
HG974601:0
HG974602:0
HG974604:0
HG974605:0
HM067843:0
HM067844:0
HM067847:0
HM067848:0
HM067849:0
HM067850:0
HM067852:0
HM067853:0
HM067854:0
HM067855:0
HM067856:0
HM067857:0
HM067858:0
HM067859:0
HM067860:0
HM067861:0
HM067862:0
HM067863:0
HM627215:0
LK391771:0
LK391772:0
LK391773:0
LK391774:0
LK391775:0
LK391776:0
LK391777:0
LK391778:0
LK391779:0
LK391780:0
LK391781:0
LK391782:0
LK391783:0
LK391784:0
LM611904:0
LM611905:0
LN623522:0
LN830949:0
LN854575:0
LN854576:0
MH049486:0
U95989:0
MK651797:0
HQ447401:0
KJ891349:0
KJ901488:0
KJ901489:0
HQ447185:0
KJ901490:0
KJ905776:0
KJ905777:0
KJ534866:0
AB528619:0
AJ297583:0
AJ297584:0
AY935719:0
CU689080:0
GeneID:3123 3125 3126 3127
HGNC/MGI_ID:HGNC:4948 HGNC:4951 HGNC:4952 HGNC:4953
UniProt_ID:A0A0A1I7P0 A0A0A1I7P2 A0A0A1I8N5 A0A0A1IBB2 A0A0A1IBB5 A0A0A8LC21 A0A0A8LC38 A0A0A8LC52 A0A0A8LDV8 A0A0A8LDW1 A0A0A8LDW7 A0A0A8LDY6 A0A0A8LDZ3 A0A0A8LE01 A0A0A8LE16 A0A0A8LE23 A0A0A8LE32 A0A0G4PYK8 A0A0G4PYZ0 A0A5K1TT61 A0A5K1TT63 A0A5K1TTE0 A0A5K1TTE4 A0A5K1TTE6 A0A5K1TTE7 A0A5K1TTI9 A0A5K1TTN8 P79552 Q2LIR3 Q30179 Q4ZJJ2 Q56FN4 Q56FN5 Q5XKU0 Q95462 Q95IH1 X5DNQ0
Nearer transcript ids and distances:
  • BC171883:-5
  • M11867:-8
  • M20504:-14
  • M27635:-16
  • M28583:-18
  • AF490771:18
  • AK226058:-19
  • L76133:-19
  • U65585:-19
  • BC033827:-22
  • M20430:-22
  • AB062112:-23
  • M26038:-24
  • BC007920:-25
  • M28584:28
  • M30180:28
  • M33600:-30
  • BC108922:-34
  • X12544:-37
  • AK291499:-41
  • X03069:-41
  • AK225690:-42
  • AK290388:-42
  • AK225683:-42
  • BC031023:-42
  • BC008403:-42
  • AK289463:-42
  • X99896:44
  • D86415:65
  • U17381:72
  • U17379:72
  • AK291987:-73
  • LP895650:-73
  • U17380:74
  • AK293020:-83
  • ENST00000360004.5:-85
  • NM_002124.4:-85
  • LP896422:-85
  • M16957:86
  • M16959:86
  • M17378:86
  • AF010142:86
  • M16958:86
view more...
Gene_name:HLA-DRB1
Gene_symbol:HLA-DRB1 HLA-DRB3 HLA-DRB4 HLA-DRB5
Gene_synonyms:
Gene_source:HGNC:4948 HGNC:4951 HGNC:4952 HGNC:4953



TATA-Box annotation

Distance to TSS:84
Nearest PromoterID:NM_001243965
Entrez ID:3123
Nearest Unigene:Hs.534322
Nearest Refseq:NM_002124
Nearest Ensembl:ENSG00000196126
Gene Name:HLA-DRB1
Gene Alias:DRB1|HLA-DR1B|HLA-DRB|SS1
Gene Type:protein-coding
CpG%:0.000000
GC%:0.565217
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.


















Property "Nearest transcripts" (as page type) with input value "BC171883:-5 M11867:-8 M20504:-14 M27635:-16 M28583:-18 AF490771:18 AK226058:-19 L76133:-19 U65585:-19 BC033827:-22 M20430:-22 AB062112:-23 M26038:-24 BC007920:-25 M28584:28 M30180:28 M33600:-30 BC108922:-34 X12544:-37 AK291499:-41 X03069:-41 AK225690:-42 AK290388:-42 AK225683:-42 BC031023:-42 BC008403:-42 AK289463:-42 X99896:44 D86415:65 U17381:72 U17379:72 AK291987:-73 LP895650:-73 U17380:74 AK293020:-83 ENST00000360004.5:-85 NM_002124.4:-85 LP896422:-85 M16957:86 M16959:86 M17378:86 AF010142:86 M16958:86" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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