TSS: Rfhg 86567.1: Difference between revisions

Revision as of 02:46, 13 November 2024

Basic information about the TSS

TSS ID:	rfhg_86567.1
Species:	human
Chr:	chr6

Start:	117602636
End:	117602683
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3890914,EH38E2497203)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	GOPC
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-148
Nearest PromoterID:	NM_001017408
Entrez ID:	57120
Nearest Unigene:	Hs.191539
Nearest Refseq:	NM_020399
Nearest Ensembl:	ENSG00000047932
Gene Name:	GOPC
Gene Alias:	CAL\|FIG\|GOPC1\|PIST\|dJ94G16.2
Gene Type:	protein-coding
CpG%:	0.042553
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=promoter-TSS (NM_020399)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001017408
 |nearest_refseq=NM_020399
+|nearest_transcripts=
 |nearest_unigene=Hs.191539
 |peak_score=1