TSS: Rfhg 87439.1: Difference between revisions

Revision as of 03:02, 13 November 2024

Basic information about the TSS

TSS ID:	rfhg_87439.1
Species:	human
Chr:	chr6

Start:	133891856
End:	133891866
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D3902770,EH38E2504693)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	TCF21
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	2739
Nearest PromoterID:	NM_003206
Entrez ID:	6943
Nearest Unigene:	Hs.78061
Nearest Refseq:	NM_003206
Nearest Ensembl:	ENSG00000118526
Gene Name:	TCF21
Gene Alias:	POD1\|bHLHa23
Gene Type:	protein-coding
CpG%:	0.100000
GC%:	0.727273
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=3' UTR (NM_003206, exon 2 of 2)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_003206
 |nearest_refseq=NM_003206
+|nearest_transcripts=
 |nearest_unigene=Hs.78061
 |peak_score=1