TSS: Rfhg 9072.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000340281.9:0 ENST00000394583.7:0 ENST00000361911.9:0 ENST00000370447.3:0 NM_182975.4:0 NM_001320185.2:0 NM_182976.4:0 NM_181781.4:0 BC052645:0 BC061521:0 BC038454:0 BC090866:0 AK000410:0 BC053888:0 BC014899:0 BC070341:0 BC013102:0 AK303707:0 AK297073:0 KJ900575:70
|annotation=promoter-TSS (NR_002830)
|annotation=promoter-TSS (NR_002830)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_181781
|nearest_promoter_id=NM_181781
|nearest_refseq=NM_181781
|nearest_refseq=NM_181781
|nearest_transcripts=KJ900575:70
|nearest_unigene=Hs.306221
|nearest_unigene=Hs.306221
|peak_score=1
|peak_score=1
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|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000340281.9 ENST00000394583.7 ENST00000361911.9 ENST00000370447.3 BC052645 BC061521 BC038454 BC090866 AK000410 BC053888 BC014899 BC070341 BC013102 AK303707 AK297073
|transcript_name=ENST00000340281.9 ENST00000394583.7 ENST00000361911.9 ENST00000370447.3 NM_182975.4 NM_001320185.2 NM_182976.4 NM_181781.4 BC052645 BC061521 BC038454 BC090866 AK000410 BC053888 BC014899 BC070341 BC013102 AK303707 AK297073
|tss_cluster_detected=11
|tss_cluster_detected=11
|tss_id=rfhg_9072.1
|tss_id=rfhg_9072.1

Revision as of 04:03, 13 November 2024

Basic information about the TSS

TSS ID:rfhg_9072.1
Species:human
Chr:chr1
Start:89995103
End:89995186
Strand:+
Source datasetsPRJNA401781|PRJNA548673|PRJNA615891|PRJDB5282|PRJNA4843412
|DRA013844|PRJNA597322
ProtocolCAGE|ReCappable-seq|SLIC_CAGE|C1CAGE|NETCAGE|TIF-seq2
|oligo_capping|RAMPAGE|STRIPE-seq
TSS cluster detected*11

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2195331,EH38E1366371)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000340281.9:0
ENST00000394583.7:0
ENST00000361911.9:0
ENST00000370447.3:0
NM_182975.4:0
NM_001320185.2:0
NM_182976.4:0
NM_181781.4:0
BC052645:0
BC061521:0
BC038454:0
BC090866:0
AK000410:0
BC053888:0
BC014899:0
BC070341:0
BC013102:0
AK303707:0
AK297073:0
GeneID:284695
HGNC/MGI_ID:HGNC:14104
UniProt_ID:A0A0A0MRN4 E2QRN4 Q5BKZ1
Nearer transcript ids and distances:
  • KJ900575:70
Gene_name:ZNF326
Gene_symbol:ZNF326
Gene_synonyms:FLJ20403 ZAN75 ZIRD Zfp326
Gene_source:HGNC:14104



TATA-Box annotation

Distance to TSS:34
Nearest PromoterID:NM_181781
Entrez ID:284695
Nearest Unigene:Hs.306221
Nearest Refseq:NM_181781
Nearest Ensembl:ENSG00000162664
Gene Name:ZNF326
Gene Alias:ZAN75|ZIRD|Zfp326|dJ871E2.1
Gene Type:protein-coding
CpG%:0.156627
GC%:0.738095
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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