TSS: Rfhg 90722.1: Difference between revisions

Revision as of 04:03, 13 November 2024

Basic information about the TSS

TSS ID:	rfhg_90722.1
Species:	human
Chr:	chr7

Start:	1922076
End:	1922117
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D3937700,EH38E2528991)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	MAD1L1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	18475
Nearest PromoterID:	NM_001304525
Entrez ID:	8379
Nearest Unigene:	Hs.654838
Nearest Refseq:	NM_003550
Nearest Ensembl:	ENSG00000002822
Gene Name:	MAD1L1
Gene Alias:	MAD1\|PIG9\|TP53I9\|TXBP181
Gene Type:	protein-coding
CpG%:	0.048780
GC%:	0.619048
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_001013837, intron 17 of 18)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001304525
 |nearest_refseq=NM_003550
+|nearest_transcripts=
 |nearest_unigene=Hs.654838
 |peak_score=1