TSS: Rfhg 91333.1: Difference between revisions

Revision as of 04:14, 13 November 2024

Basic information about the TSS

TSS ID:	rfhg_91333.1
Species:	human
Chr:	chr7

Start:	7271655
End:	7271682
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D3942695,EH38E2532714)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000447039.1:-247
GeneID:	101927354
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LOC101927354
Gene_symbol:	LINC03016
Gene_synonyms:
Gene_source:	EntrezGene:101927354

TATA-Box annotation

Distance to TSS:	16514
Nearest PromoterID:	NR_108073
Entrez ID:	101927354
Nearest Unigene:	Hs.520664
Nearest Refseq:	NR_108073
Nearest Ensembl:
Gene Name:	LOC101927354
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.428571
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000447039.1:-247
 |annotation=intron (NR_108073, intron 3 of 3)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_108073
 |nearest_refseq=NR_108073
+|nearest_transcripts=
 |nearest_unigene=Hs.520664
 |peak_score=1