TSS: Rfhg 92264.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000325042.2:136 NR_131935.1:136 BC027978:140 ENST00000650428.1:143 | |||
|annotation=promoter-TSS (NR_131935) | |annotation=promoter-TSS (NR_131935) | ||
|ccre_category=N | |ccre_category=N | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NR_131935 | |nearest_promoter_id=NR_131935 | ||
|nearest_refseq=NR_131935 | |nearest_refseq=NR_131935 | ||
|nearest_transcripts=BC027978:140 ENST00000650428.1:143 | |||
|nearest_unigene=Hs.512234 | |nearest_unigene=Hs.512234 | ||
|peak_score=1 | |peak_score=1 | ||
| Line 33: | Line 35: | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000325042.2 | |transcript_name=ENST00000325042.2 NR_131935.1 | ||
|tss_cluster_detected=1 | |tss_cluster_detected=1 | ||
|tss_id=rfhg_92264.1 | |tss_id=rfhg_92264.1 | ||
Revision as of 04:30, 13 November 2024
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -152 |
|---|---|
| Nearest PromoterID: | NR_131935 |
| Entrez ID: | 541472 |
| Nearest Unigene: | Hs.512234 |
| Nearest Refseq: | NR_131935 |
| Nearest Ensembl: | ENSG00000179428 |
| Gene Name: | LOC541472 |
| Gene Alias: | - |
| Gene Type: | ncRNA |
| CpG%: | 0.060606 |
| GC%: | 0.588235 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.