TSS: Rfhg 93495.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=LF331208:17 MA566785:17 D87457:-62 ENST00000464262.6:-86 BC003051:-86 BC077074:-87 NM_130442.4:-103 NR_038120.2:-103 AK301151:-111 ENST00000487843.1:-119 LF331209:152 MA566786:152 LF331210:240 MA566787:240 LF331211:405 MA566788:405 ENST00000396045.7:-479
|annotation=promoter-TSS (NM_001039459)
|annotation=promoter-TSS (NM_001039459)
|ccre_category=pELS
|ccre_category=pELS
Line 25: Line 26:
|nearest_promoter_id=NR_038120
|nearest_promoter_id=NR_038120
|nearest_refseq=NM_014800
|nearest_refseq=NM_014800
|nearest_transcripts=D87457:-62 ENST00000464262.6:-86 BC003051:-86 BC077074:-87 NM_130442.4:-103 NR_038120.2:-103 AK301151:-111 ENST00000487843.1:-119 LF331209:152 MA566786:152 LF331210:240 MA566787:240 LF331211:405 MA566788:405 ENST00000396045.7:-479
|nearest_unigene=Hs.434989
|nearest_unigene=Hs.434989
|peak_score=1
|peak_score=1

Revision as of 04:53, 13 November 2024

Basic information about the TSS

TSS ID:rfhg_93495.1
Species:human
Chr:chr7
Start:36986022
End:36986030
Strand:-
Source datasetsPRJNA548673
ProtocolReCappable-seq
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:pELS,CTCF-bound (EH38D3966889,EH38E2548889)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:LF331208:17
MA566785:17
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • D87457:-62
  • ENST00000464262.6:-86
  • BC003051:-86
  • BC077074:-87
  • NM_130442.4:-103
  • NR_038120.2:-103
  • AK301151:-111
  • ENST00000487843.1:-119
  • LF331209:152
  • MA566786:152
  • LF331210:240
  • MA566787:240
  • LF331211:405
  • MA566788:405
  • ENST00000396045.7:-479
view more...
Gene_name:ELMO1
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:240
Nearest PromoterID:NR_038120
Entrez ID:9844
Nearest Unigene:Hs.434989
Nearest Refseq:NM_014800
Nearest Ensembl:ENSG00000155849
Gene Name:ELMO1
Gene Alias:CED-12|CED12|ELMO-1
Gene Type:protein-coding
CpG%:0.000000
GC%:0.444444
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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