TSS: Rfhg 93623.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=KC170727:0 KJ905327:0 X72500:0 M27335:0 M16768:-104 BC072387:133 AJ583012:147 AJ583014:147 AF512447:147 AF512448:147 AF512449:147 AF512450:147 AF512451:147 AF512452:147 AF512453:147 AF512454:147 AF512455:147 AF512456:147 AF512457:147 M16804:161 AF085845:267 JQ956403:311 Z11171:361 Z11172:361 Z11173:361 Z11175:361 Z11205:361 Z11207:361 Z11208:361 Z11210:361 Z11212:361 Z11214:361 Z11215:361 Z11216:361 Z11218:361 Z11219:361 Z11220:361 Z11222:361 Z11228:361 Z11229:361 Z11230:361 Z11234:361 Z11254:361 Z11255:361 Z11258:361 Z11259:361 Z11261:361 Z11262:361 Z11263:361 Z11264:361 Z11265:361 Z11267:361 Z11268:361 Z11269:361 Z11270:361 Z11271:361 Z11276:361 Z11289:361 Z11290:361 Z11293:361 Z11295:361 Z11309:361 Z11311:361 Z11315:361 Z11317:361 Z11318:361 Z11320:361 Z11323:361 Z11325:361 Z11329:361 Z11330:361 Z11340:361 Z11342:361 Z11365:361 Z11366:361 Z11377:361 Z11380:361 Z11386:361 Z11389:361 Z11393:361 Z11395:361 Z11398:361 Z11400:361 Z11402:361 Z11404:361 Z11406:361 Z11169:361 Z11170:361 Z11174:361 Z11176:361 Z11177:361 Z11178:361 Z11179:361 Z11180:361 Z11181:361 Z11182:361 Z11183:361 Z11184:361 Z11185:361 Z11186:361 Z11187:361 Z11188:361 Z11189:361 Z11190:361 Z11191:361 Z11192:361 Z11193:361 Z11194:361 Z11195:361 Z11196:361 Z11197:361 Z11198:361 Z11199:361 Z11200:361 Z11201:361 Z11202:361 Z11203:361 Z11204:361 Z11206:361 Z11209:361 Z11211:361 Z11213:361 Z11217:361 Z11221:361 Z11223:361 Z11224:361 Z11225:361 Z11226:361 Z11227:361 Z11231:361 Z11232:361 Z11233:361 Z11235:361 Z11236:361 Z11238:361 Z11239:361 Z11240:361 Z11241:361 Z11242:361 Z11243:361 Z11244:361 Z11245:361 Z11246:361 Z11247:361 Z11248:361 Z11249:361 Z11250:361 Z11251:361 Z11252:361 Z11253:361 Z11256:361 Z11257:361 Z11266:361 Z11272:361 Z11273:361 Z11274:361 Z11275:361 Z11277:361 Z11278:361 Z11279:361 Z11280:361 Z11281:361 Z11282:361 Z11283:361 Z11284:361 Z11285:361 Z11286:361 Z11287:361 Z11288:361 Z11291:361 Z11292:361 Z11294:361 Z11296:361 Z11297:361 Z11298:361 Z11299:361 Z11300:361 Z11301:361 Z11302:361 Z11303:361 Z11304:361 Z11305:361 Z11306:361 Z11307:361 Z11308:361 Z11310:361 Z11312:361 Z11313:361 Z11314:361 Z11316:361 Z11319:361 Z11321:361 Z11322:361 Z11324:361 Z11326:361 Z11327:361 Z11328:361 Z11331:361 Z11332:361 Z11333:361 Z11334:361 Z11335:361 Z11336:361 Z11337:361 Z11338:361 Z11339:361 Z11341:361 Z11343:361 Z11344:361 Z11345:361 Z11346:361 Z11347:361 Z11348:361 Z11349:361 Z11350:361 Z11351:361 Z11352:361 Z11353:361 Z11354:361 Z11355:361 Z11356:361 Z11357:361 Z11358:361 Z11359:361 Z11360:361 Z11361:361 Z11362:361 Z11363:361 Z11364:361 Z11367:361 Z11368:361 Z11369:361 Z11370:361 Z11371:361 Z11372:361 Z11373:361 Z11374:361 Z11375:361 Z11376:361 Z11378:361 Z11379:361 Z11381:361 Z11382:361 Z11383:361 Z11384:361 Z11385:361 Z11387:361 Z11388:361 Z11390:361 Z11391:361 Z11392:361 Z11394:361 Z11396:361 Z11397:361 Z11399:361 Z11401:361 Z11403:361 Z11405:361 Z11407:361 Z11408:361 Z11409:361 Z11410:361 Z11260:361 Z11237:361 S69451:429 BC072396:-448
|annotation=Intergenic
|annotation=Intergenic
|ccre_category=pELS
|ccre_category=pELS
Line 25: Line 26:
|nearest_promoter_id=NR_040085
|nearest_promoter_id=NR_040085
|nearest_refseq=NR_040085
|nearest_refseq=NR_040085
|nearest_transcripts=M16768:-104 BC072387:133 AJ583012:147 AJ583014:147 AF512447:147 AF512448:147 AF512449:147 AF512450:147 AF512451:147 AF512452:147 AF512453:147 AF512454:147 AF512455:147 AF512456:147 AF512457:147 M16804:161 AF085845:267 JQ956403:311 Z11171:361 Z11172:361 Z11173:361 Z11175:361 Z11205:361 Z11207:361 Z11208:361 Z11210:361 Z11212:361 Z11214:361 Z11215:361 Z11216:361 Z11218:361 Z11219:361 Z11220:361 Z11222:361 Z11228:361 Z11229:361 Z11230:361 Z11234:361 Z11254:361 Z11255:361 Z11258:361 Z11259:361 Z11261:361 Z11262:361 Z11263:361 Z11264:361 Z11265:361 Z11267:361 Z11268:361 Z11269:361 Z11270:361 Z11271:361 Z11276:361 Z11289:361 Z11290:361 Z11293:361 Z11295:361 Z11309:361 Z11311:361 Z11315:361 Z11317:361 Z11318:361 Z11320:361 Z11323:361 Z11325:361 Z11329:361 Z11330:361 Z11340:361 Z11342:361 Z11365:361 Z11366:361 Z11377:361 Z11380:361 Z11386:361 Z11389:361 Z11393:361 Z11395:361 Z11398:361 Z11400:361 Z11402:361 Z11404:361 Z11406:361 Z11169:361 Z11170:361 Z11174:361 Z11176:361 Z11177:361 Z11178:361 Z11179:361 Z11180:361 Z11181:361 Z11182:361 Z11183:361 Z11184:361 Z11185:361 Z11186:361 Z11187:361 Z11188:361 Z11189:361 Z11190:361 Z11191:361 Z11192:361 Z11193:361 Z11194:361 Z11195:361 Z11196:361 Z11197:361 Z11198:361 Z11199:361 Z11200:361 Z11201:361 Z11202:361 Z11203:361 Z11204:361 Z11206:361 Z11209:361 Z11211:361 Z11213:361 Z11217:361 Z11221:361 Z11223:361 Z11224:361 Z11225:361 Z11226:361 Z11227:361 Z11231:361 Z11232:361 Z11233:361 Z11235:361 Z11236:361 Z11238:361 Z11239:361 Z11240:361 Z11241:361 Z11242:361 Z11243:361 Z11244:361 Z11245:361 Z11246:361 Z11247:361 Z11248:361 Z11249:361 Z11250:361 Z11251:361 Z11252:361 Z11253:361 Z11256:361 Z11257:361 Z11266:361 Z11272:361 Z11273:361 Z11274:361 Z11275:361 Z11277:361 Z11278:361 Z11279:361 Z11280:361 Z11281:361 Z11282:361 Z11283:361 Z11284:361 Z11285:361 Z11286:361 Z11287:361 Z11288:361 Z11291:361 Z11292:361 Z11294:361 Z11296:361 Z11297:361 Z11298:361 Z11299:361 Z11300:361 Z11301:361 Z11302:361 Z11303:361 Z11304:361 Z11305:361 Z11306:361 Z11307:361 Z11308:361 Z11310:361 Z11312:361 Z11313:361 Z11314:361 Z11316:361 Z11319:361 Z11321:361 Z11322:361 Z11324:361 Z11326:361 Z11327:361 Z11328:361 Z11331:361 Z11332:361 Z11333:361 Z11334:361 Z11335:361 Z11336:361 Z11337:361 Z11338:361 Z11339:361 Z11341:361 Z11343:361 Z11344:361 Z11345:361 Z11346:361 Z11347:361 Z11348:361 Z11349:361 Z11350:361 Z11351:361 Z11352:361 Z11353:361 Z11354:361 Z11355:361 Z11356:361 Z11357:361 Z11358:361 Z11359:361 Z11360:361 Z11361:361 Z11362:361 Z11363:361 Z11364:361 Z11367:361 Z11368:361 Z11369:361 Z11370:361 Z11371:361 Z11372:361 Z11373:361 Z11374:361 Z11375:361 Z11376:361 Z11378:361 Z11379:361 Z11381:361 Z11382:361 Z11383:361 Z11384:361 Z11385:361 Z11387:361 Z11388:361 Z11390:361 Z11391:361 Z11392:361 Z11394:361 Z11396:361 Z11397:361 Z11399:361 Z11401:361 Z11403:361 Z11405:361 Z11407:361 Z11408:361 Z11409:361 Z11410:361 Z11260:361 Z11237:361 S69451:429 BC072396:-448
|nearest_unigene=Hs.173034
|nearest_unigene=Hs.173034
|peak_score=1
|peak_score=1
Line 33: Line 35:
|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=KC170727 X72500 M27335
|transcript_name=KC170727 KJ905327 X72500 M27335
|tss_cluster_detected=1
|tss_cluster_detected=1
|tss_id=rfhg_93623.1
|tss_id=rfhg_93623.1

Revision as of 04:55, 13 November 2024

Basic information about the TSS

TSS ID:rfhg_93623.1
Species:human
Chr:chr7
Start:38317469
End:38317540
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:pELS,CTCF-bound (EH38D3967998,EH38E2549725)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:KC170727:0
KJ905327:0
X72500:0
M27335:0
GeneID:445347
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • M16768:-104
  • BC072387:133
  • AJ583012:147
  • AJ583014:147
  • AF512447:147
  • AF512448:147
  • AF512449:147
  • AF512450:147
  • AF512451:147
  • AF512452:147
  • AF512453:147
  • AF512454:147
  • AF512455:147
  • AF512456:147
  • AF512457:147
  • M16804:161
  • AF085845:267
  • JQ956403:311
  • Z11171:361
  • Z11172:361
  • Z11173:361
  • Z11175:361
  • Z11205:361
  • Z11207:361
  • Z11208:361
  • Z11210:361
  • Z11212:361
  • Z11214:361
  • Z11215:361
  • Z11216:361
  • Z11218:361
  • Z11219:361
  • Z11220:361
  • Z11222:361
  • Z11228:361
  • Z11229:361
  • Z11230:361
  • Z11234:361
  • Z11254:361
  • Z11255:361
  • Z11258:361
  • Z11259:361
  • Z11261:361
  • Z11262:361
  • Z11263:361
  • Z11264:361
  • Z11265:361
  • Z11267:361
  • Z11268:361
  • Z11269:361
  • Z11270:361
  • Z11271:361
  • Z11276:361
  • Z11289:361
  • Z11290:361
  • Z11293:361
  • Z11295:361
  • Z11309:361
  • Z11311:361
  • Z11315:361
  • Z11317:361
  • Z11318:361
  • Z11320:361
  • Z11323:361
  • Z11325:361
  • Z11329:361
  • Z11330:361
  • Z11340:361
  • Z11342:361
  • Z11365:361
  • Z11366:361
  • Z11377:361
  • Z11380:361
  • Z11386:361
  • Z11389:361
  • Z11393:361
  • Z11395:361
  • Z11398:361
  • Z11400:361
  • Z11402:361
  • Z11404:361
  • Z11406:361
  • Z11169:361
  • Z11170:361
  • Z11174:361
  • Z11176:361
  • Z11177:361
  • Z11178:361
  • Z11179:361
  • Z11180:361
  • Z11181:361
  • Z11182:361
  • Z11183:361
  • Z11184:361
  • Z11185:361
  • Z11186:361
  • Z11187:361
  • Z11188:361
  • Z11189:361
  • Z11190:361
  • Z11191:361
  • Z11192:361
  • Z11193:361
  • Z11194:361
  • Z11195:361
  • Z11196:361
  • Z11197:361
  • Z11198:361
  • Z11199:361
  • Z11200:361
  • Z11201:361
  • Z11202:361
  • Z11203:361
  • Z11204:361
  • Z11206:361
  • Z11209:361
  • Z11211:361
  • Z11213:361
  • Z11217:361
  • Z11221:361
  • Z11223:361
  • Z11224:361
  • Z11225:361
  • Z11226:361
  • Z11227:361
  • Z11231:361
  • Z11232:361
  • Z11233:361
  • Z11235:361
  • Z11236:361
  • Z11238:361
  • Z11239:361
  • Z11240:361
  • Z11241:361
  • Z11242:361
  • Z11243:361
  • Z11244:361
  • Z11245:361
  • Z11246:361
  • Z11247:361
  • Z11248:361
  • Z11249:361
  • Z11250:361
  • Z11251:361
  • Z11252:361
  • Z11253:361
  • Z11256:361
  • Z11257:361
  • Z11266:361
  • Z11272:361
  • Z11273:361
  • Z11274:361
  • Z11275:361
  • Z11277:361
  • Z11278:361
  • Z11279:361
  • Z11280:361
  • Z11281:361
  • Z11282:361
  • Z11283:361
  • Z11284:361
  • Z11285:361
  • Z11286:361
  • Z11287:361
  • Z11288:361
  • Z11291:361
  • Z11292:361
  • Z11294:361
  • Z11296:361
  • Z11297:361
  • Z11298:361
  • Z11299:361
  • Z11300:361
  • Z11301:361
  • Z11302:361
  • Z11303:361
  • Z11304:361
  • Z11305:361
  • Z11306:361
  • Z11307:361
  • Z11308:361
  • Z11310:361
  • Z11312:361
  • Z11313:361
  • Z11314:361
  • Z11316:361
  • Z11319:361
  • Z11321:361
  • Z11322:361
  • Z11324:361
  • Z11326:361
  • Z11327:361
  • Z11328:361
  • Z11331:361
  • Z11332:361
  • Z11333:361
  • Z11334:361
  • Z11335:361
  • Z11336:361
  • Z11337:361
  • Z11338:361
  • Z11339:361
  • Z11341:361
  • Z11343:361
  • Z11344:361
  • Z11345:361
  • Z11346:361
  • Z11347:361
  • Z11348:361
  • Z11349:361
  • Z11350:361
  • Z11351:361
  • Z11352:361
  • Z11353:361
  • Z11354:361
  • Z11355:361
  • Z11356:361
  • Z11357:361
  • Z11358:361
  • Z11359:361
  • Z11360:361
  • Z11361:361
  • Z11362:361
  • Z11363:361
  • Z11364:361
  • Z11367:361
  • Z11368:361
  • Z11369:361
  • Z11370:361
  • Z11371:361
  • Z11372:361
  • Z11373:361
  • Z11374:361
  • Z11375:361
  • Z11376:361
  • Z11378:361
  • Z11379:361
  • Z11381:361
  • Z11382:361
  • Z11383:361
  • Z11384:361
  • Z11385:361
  • Z11387:361
  • Z11388:361
  • Z11390:361
  • Z11391:361
  • Z11392:361
  • Z11394:361
  • Z11396:361
  • Z11397:361
  • Z11399:361
  • Z11401:361
  • Z11403:361
  • Z11405:361
  • Z11407:361
  • Z11408:361
  • Z11409:361
  • Z11410:361
  • Z11260:361
  • Z11237:361
  • S69451:429
  • BC072396:-448
view more...
Gene_name:TRG-AS1
Gene_symbol:TARP
Gene_synonyms:CD3G TCRG TCRGC1 TCRGC2 TCRGV
Gene_source:EntrezGene:445347



TATA-Box annotation

Distance to TSS:-24073
Nearest PromoterID:NR_040085
Entrez ID:100506776
Nearest Unigene:Hs.173034
Nearest Refseq:NR_040085
Nearest Ensembl:ENSG00000281103
Gene Name:TRG-AS1
Gene Alias:TCRGV
Gene Type:ncRNA
CpG%:0.014085
GC%:0.569444
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.


















Property "Nearest transcripts" (as page type) with input value "M16768:-104 BC072387:133 AJ583012:147 AJ583014:147 AF512447:147 AF512448:147 AF512449:147 AF512450:147 AF512451:147 AF512452:147 AF512453:147 AF512454:147 AF512455:147 AF512456:147 AF512457:147 M16804:161 AF085845:267 JQ956403:311 Z11171:361 Z11172:361 Z11173:361 Z11175:361 Z11205:361 Z11207:361 Z11208:361 Z11210:361 Z11212:361 Z11214:361 Z11215:361 Z11216:361 Z11218:361 Z11219:361 Z11220:361 Z11222:361 Z11228:361 Z11229:361 Z11230:361 Z11234:361 Z11254:361 Z11255:361 Z11258:361 Z11259:361 Z11261:361 Z11262:361 Z11263:361 Z11264:361 Z11265:361 Z11267:361 Z11268:361 Z11269:361 Z11270:361 Z11271:361 Z11276:361 Z11289:361 Z11290:361 Z11293:361 Z11295:361 Z11309:361 Z11311:361 Z11315:361 Z11317:361 Z11318:361 Z11320:361 Z11323:361 Z11325:361 Z11329:361 Z11330:361 Z11340:361 Z11342:361 Z11365:361 Z11366:361 Z11377:361 Z11380:361 Z11386:361 Z11389:361 Z11393:361 Z11395:361 Z11398:361 Z11400:361 Z11402:361 Z11404:361 Z11406:361 Z11169:361 Z11170:361 Z11174:361 Z11176:361 Z11177:361 Z11178:361 Z11179:361 Z11180:361 Z11181:361 Z11182:361 Z11183:361 Z11184:361 Z11185:361 Z11186:361 Z11187:361 Z11188:361 Z11189:361 Z11190:361 Z11191:361 Z11192:361 Z11193:361 Z11194:361 Z11195:361 Z11196:361 Z11197:361 Z11198:361 Z11199:361 Z11200:361 Z11201:361 Z11202:361 Z11203:361 Z11204:361 Z11206:361 Z11209:361 Z11211:361 Z11213:361 Z11217:361 Z11221:361 Z11223:361 Z11224:361 Z11225:361 Z11226:361 Z11227:361 Z11231:361 Z11232:361 Z11233:361 Z11235:361 Z11236:361 Z11238:361 Z11239:361 Z11240:361 Z11241:361 Z11242:361 Z11243:361 Z11244:361 Z11245:361 Z11246:361 Z11247:361 Z11248:361 Z11249:361 Z11250:361 Z11251:361 Z11252:361 Z11253:361 Z11256:361 Z11257:361 Z11266:361 Z11272:361 Z11273:361 Z11274:361 Z11275:361 Z11277:361 Z11278:361 Z11279:361 Z11280:361 Z11281:361 Z11282:361 Z11283:361 Z11284:361 Z11285:361 Z11286:361 Z11287:361 Z11288:361 Z11291:361 Z11292:361 Z11294:361 Z11296:361 Z11297:361 Z11298:361 Z11299:361 Z11300:361 Z11301:361 Z11302:361 Z11303:361 Z11304:361 Z11305:361 Z11306:361 Z11307:361 Z11308:361 Z11310:361 Z11312:361 Z11313:361 Z11314:361 Z11316:361 Z11319:361 Z11321:361 Z11322:361 Z11324:361 Z11326:361 Z11327:361 Z11328:361 Z11331:361 Z11332:361 Z11333:361 Z11334:361 Z11335:361 Z11336:361 Z11337:361 Z11338:361 Z11339:361 Z11341:361 Z11343:361 Z11344:361 Z11345:361 Z11346:361 Z11347:361 Z11348:361 Z11349:361 Z11350:361 Z11351:361 Z11352:361 Z11353:361 Z11354:361 Z11355:361 Z11356:361 Z11357:361 Z11358:361 Z11359:361 Z11360:361 Z11361:361 Z11362:361 Z11363:361 Z11364:361 Z11367:361 Z11368:361 Z11369:361 Z11370:361 Z11371:361 Z11372:361 Z11373:361 Z11374:361 Z11375:361 Z11376:361 Z11378:361 Z11379:361 Z11381:361 Z11382:361 Z11383:361 Z11384:361 Z11385:361 Z11387:361 Z11388:361 Z11390:361 Z11391:361 Z11392:361 Z11394:361 Z11396:361 Z11397:361 Z11399:361 Z11401:361 Z11403:361 Z11405:361 Z11407:361 Z11408:361 Z11409:361 Z11410:361 Z11260:361 Z11237:361 S69451:429 BC072396:-448" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "https://reftss.riken.jp/reftss/index.php?title=TSS:Rfhg_93623.1&oldid=3389937"