TSS: Rfhg 95748.1: Difference between revisions

Revision as of 05:33, 13 November 2024

Basic information about the TSS

TSS ID:	rfhg_95748.1
Species:	human
Chr:	chr7

Start:	77416469
End:	77416517
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3991744,EH38E2565187)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000608884.2:156
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	GSAP
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-144
Nearest PromoterID:	NR_146938
Entrez ID:	54103
Nearest Unigene:	Hs.186649
Nearest Refseq:	NM_017439
Nearest Ensembl:	ENSG00000186088
Gene Name:	GSAP
Gene Alias:	PION
Gene Type:	protein-coding
CpG%:	0.104167
GC%:	0.755102
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000608884.2:156
 |annotation=promoter-TSS (NM_001350899)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_146938
 |nearest_refseq=NM_017439
+|nearest_transcripts=
 |nearest_unigene=Hs.186649
 |peak_score=1