TSS: Rfhg 97632.1: Difference between revisions

Revision as of 06:08, 13 November 2024

Basic information about the TSS

TSS ID:	rfhg_97632.1
Species:	human
Chr:	chr7

Start:	100896674
End:	100896690
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D4008692,EH38E2576026)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF211990:228 MA447567:228
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000445236.3:-229 AY389977:-229 ENST00000441605.2:-284 NM_001367918.1:-304 NM_001367919.2:-304 NR_160407.1:-304 view more...

Gene_name:	ACHE
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	312
Nearest PromoterID:	NM_001367918
Entrez ID:	43
Nearest Unigene:	Hs.154495
Nearest Refseq:	NM_000665
Nearest Ensembl:	ENSG00000087085
Gene Name:	ACHE
Gene Alias:	ACEE\|ARACHE\|N-ACHE\|YT
Gene Type:	protein-coding
CpG%:	0.125000
GC%:	0.470588
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF211990:228 MA447567:228 ENST00000445236.3:-229 AY389977:-229 ENST00000441605.2:-284 NM_001367918.1:-304 NM_001367919.2:-304 NR_160407.1:-304
 |annotation=promoter-TSS (NM_001367915)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001367918
 |nearest_refseq=NM_000665
+|nearest_transcripts=ENST00000445236.3:-229 AY389977:-229 ENST00000441605.2:-284 NM_001367918.1:-304 NM_001367919.2:-304 NR_160407.1:-304
 |nearest_unigene=Hs.154495
 |peak_score=1