TSS: Rfhg 9908.1: Difference between revisions

Revision as of 06:35, 13 November 2024

Basic information about the TSS

TSS ID:	rfhg_9908.1
Species:	human
Chr:	chr1

Start:	99970510
End:	99970522
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2203191,EH38E1371439)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001271685.2:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000532693.5:-57 ENST00000370153.6:-74 CR749816:-74 ENST00000640357.1:-429 ENST00000370155.9:-453 ENST00000640238.1:-455 ENST00000638876.1:-464 ENST00000639171.1:-471 ENST00000638338.1:-474 ENST00000640600.1:-477 ENST00000639088.1:-477 ENST00000638929.1:-479 ENST00000638779.1:-479 AK290573:-479 ENST00000640732.1:-480 ENST00000638988.1:-486 ENST00000640178.1:-486 ENST00000640360.1:-486 ENST00000639994.1:-490 ENST00000639037.1:-492 ENST00000639040.1:-492 ENST00000640726.1:-494 ENST00000640715.1:-497 ENST00000465289.6:-497 ENST00000638968.1:-499 ENST00000638792.1:-499 view more...

Gene_name:	SLC35A3
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-1
Nearest PromoterID:	NM_001271685
Entrez ID:	23443
Nearest Unigene:	Hs.448979
Nearest Refseq:	NM_012243
Nearest Ensembl:	ENSG00000117620
Gene Name:	SLC35A3
Gene Alias:	AMRS
Gene Type:	protein-coding
CpG%:	0.083333
GC%:	0.615385
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

Property "Nearest transcripts" (as page type) with input value "ENST00000532693.5:-57 ENST00000370153.6:-74 CR749816:-74 ENST00000640357.1:-429 ENST00000370155.9:-453 ENST00000640238.1:-455 ENST00000638876.1:-464 ENST00000639171.1:-471 ENST00000638338.1:-474 ENST00000640600.1:-477 ENST00000639088.1:-477 ENST00000638929.1:-479 ENST00000638779.1:-479 AK290573:-479 ENST00000640732.1:-480 ENST00000638988.1:-486 ENST00000640178.1:-486 ENST00000640360.1:-486 ENST00000639994.1:-490 ENST00000639037.1:-492 ENST00000639040.1:-492 ENST00000640726.1:-494 ENST00000640715.1:-497 ENST00000465289.6:-497 ENST00000638968.1:-499 ENST00000638792.1:-499" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001271685.2:0 ENST00000532693.5:-57 ENST00000370153.6:-74 CR749816:-74 ENST00000640357.1:-429 ENST00000370155.9:-453 ENST00000640238.1:-455 ENST00000638876.1:-464 ENST00000639171.1:-471 ENST00000638338.1:-474 ENST00000640600.1:-477 ENST00000639088.1:-477 ENST00000638929.1:-479 ENST00000638779.1:-479 AK290573:-479 ENST00000640732.1:-480 ENST00000638988.1:-486 ENST00000640178.1:-486 ENST00000640360.1:-486 ENST00000639994.1:-490 ENST00000639037.1:-492 ENST00000639040.1:-492 ENST00000640726.1:-494 ENST00000640715.1:-497 ENST00000465289.6:-497 ENST00000638968.1:-499 ENST00000638792.1:-499
 |annotation=promoter-TSS (NM_001271685)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001271685
 |nearest_refseq=NM_012243
+|nearest_transcripts=ENST00000532693.5:-57 ENST00000370153.6:-74 CR749816:-74 ENST00000640357.1:-429 ENST00000370155.9:-453 ENST00000640238.1:-455 ENST00000638876.1:-464 ENST00000639171.1:-471 ENST00000638338.1:-474 ENST00000640600.1:-477 ENST00000639088.1:-477 ENST00000638929.1:-479 ENST00000638779.1:-479 AK290573:-479 ENST00000640732.1:-480 ENST00000638988.1:-486 ENST00000640178.1:-486 ENST00000640360.1:-486 ENST00000639994.1:-490 ENST00000639037.1:-492 ENST00000639040.1:-492 ENST00000640726.1:-494 ENST00000640715.1:-497 ENST00000465289.6:-497 ENST00000638968.1:-499 ENST00000638792.1:-499
 |nearest_unigene=Hs.448979
 |peak_score=1