TSS: Rfmm 101931.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENSMUST00000155874.2:0 NM_026538.3:0 AK076975:0 AK011136:0 AK076047:0 BC018291:0 AK077514:0 AK159793:0 AK169654:0 AK171962:0 AK145628:-15 ENSMUST00000004507.11:-17 ENSMUST00000151446.2:-17 AK191115:165 AK188357:247
|annotation=promoter-TSS (NM_026538.3)
|annotation=promoter-TSS (NM_026538.3)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_026538.3
|nearest_promoter_id=NM_026538.3
|nearest_refseq=
|nearest_refseq=
|nearest_transcripts=AK145628:-15 ENSMUST00000004507.11:-17 ENSMUST00000151446.2:-17 AK191115:165 AK188357:247
|nearest_unigene=NM_026538
|nearest_unigene=NM_026538
|peak_score=1
|peak_score=1
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|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=ENSMUST00000155874.2 AK076975 AK011136 AK076047 BC018291 AK077514 AK159793 AK169654
|transcript_name=ENSMUST00000155874.2 NM_026538.3 AK076975 AK011136 AK076047 BC018291 AK077514 AK159793 AK169654 AK171962
|tss_cluster_detected=5
|tss_cluster_detected=5
|tss_id=rfmm_101931.1
|tss_id=rfmm_101931.1

Revision as of 10:14, 13 November 2024

Basic information about the TSS

TSS ID:rfmm_101931.1
TSS ID(Version3):mm_100913.1
Species:mouse
Chr:chr11
Start:6217713
End:6217755
Strand:-
Source datasetsFANTOM5|EPD|DRA000914|PRJDB10397|GSE117655
ProtocolCAGE|TSS_database|CAGE_and_CAGEscan|C1CAGE|deepCAGE
TSS cluster detected*5

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:PLS,CTCF-bound (EM10D1202156,EM10E0494111)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENSMUST00000155874.2:0
NM_026538.3:0
AK076975:0
AK011136:0
AK076047:0
BC018291:0
AK077514:0
AK159793:0
AK169654:0
AK171962:0
GeneID:52513
HGNC/MGI_ID:MGI:1277172
UniProt_ID:Q8BK66
Nearer transcript ids and distances:
  • AK145628:-15
  • ENSMUST00000004507.11:-17
  • ENSMUST00000151446.2:-17
  • AK191115:165
  • AK188357:247
view more...
Gene_name:Ddx56
Gene_symbol:Ddx56
Gene_synonyms:2600001H07Rik D11Ertd619e DEAD_(Asp-Glu-Ala-Asp)_box_polypeptide_56 NOH61
Gene_source:MGI:1277172



TATA-Box annotation

Distance to TSS:-5
Nearest PromoterID:NM_026538.3
Entrez ID:Ddx56
Nearest Unigene:NM_026538
Nearest Refseq:
Nearest Ensembl:
Gene Name:Ddx56
Gene Alias:
Gene Type:
CpG%:0.119048
GC%:0.674419
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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