TSS: Rfmm 103597.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENSMUST00000020579.9:0 ENSMUST00000156399.8:0 ENSMUST00000127705.8:0 ENSMUST00000152749.2:0 NM_013552.2:0 BC021427:0 AF031932:0 AF079222:0 AK143123:0 AK164410:0 AK041617:0 AK164597:0 AK020144:0 AK163410:12
|annotation=promoter-TSS (NM_001290697.1)
|annotation=promoter-TSS (NM_001290697.1)
|ccre_category=PLS
|ccre_category=PLS
Line 25: Line 26:
|nearest_promoter_id=NM_013552.2
|nearest_promoter_id=NM_013552.2
|nearest_refseq=
|nearest_refseq=
|nearest_transcripts=AK163410:12
|nearest_unigene=XM_006532278
|nearest_unigene=XM_006532278
|peak_score=1
|peak_score=1
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|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=ENSMUST00000020579.9 ENSMUST00000156399.8 ENSMUST00000127705.8 ENSMUST00000152749.2 BC021427 AF031932 AF079222 AK143123 AK164410 AK041617 AK164597 AK020144
|transcript_name=ENSMUST00000020579.9 ENSMUST00000156399.8 ENSMUST00000127705.8 ENSMUST00000152749.2 NM_013552.2 BC021427 AF031932 AF079222 AK143123 AK164410 AK041617 AK164597 AK020144
|tss_cluster_detected=4
|tss_cluster_detected=4
|tss_id=rfmm_103597.1
|tss_id=rfmm_103597.1

Revision as of 10:41, 13 November 2024

Basic information about the TSS

TSS ID:rfmm_103597.1
TSS ID(Version3):mm_101690.1
Species:mouse
Chr:chr11
Start:40624201
End:40624285
Strand:-
Source datasetsFANTOM5|DRA000914|PRJDB10397|GSE117655
ProtocolCAGE|CAGE_and_CAGEscan|C1CAGE|deepCAGE
TSS cluster detected*4

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:PLS (EM10D1218057,EM10E0499755)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENSMUST00000020579.9:0
ENSMUST00000156399.8:0
ENSMUST00000127705.8:0
ENSMUST00000152749.2:0
NM_013552.2:0
BC021427:0
AF031932:0
AF079222:0
AK143123:0
AK164410:0
AK041617:0
AK164597:0
AK020144:0
GeneID:15366
HGNC/MGI_ID:MGI:104667
UniProt_ID:Q00547 Q3TP93 Q3TPG1 Q3UPW7 Q8VDR2
Nearer transcript ids and distances:
  • AK163410:12
Gene_name:Hmmr
Gene_symbol:Hmmr
Gene_synonyms:CD168 Rhamm
Gene_source:MGI:104667



TATA-Box annotation

Distance to TSS:21
Nearest PromoterID:NM_013552.2
Entrez ID:Hmmr
Nearest Unigene:XM_006532278
Nearest Refseq:
Nearest Ensembl:
Gene Name:Hmmr
Gene Alias:
Gene Type:
CpG%:0.023810
GC%:0.494118
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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