TSS: Rfmm 108119.1: Difference between revisions

Revision as of 11:55, 13 November 2024

Basic information about the TSS

TSS ID:	rfmm_108119.1
Species:	mouse
Chr:	chr11

Start:	78392568
End:	78392629
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	pELS (EM10D2372147,EM10E0977923)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	Sebox
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-1741
Nearest PromoterID:	NM_008759.2
Entrez ID:	Sebox
Nearest Unigene:	NM_008759
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Sebox
Gene Alias:
Gene Type:
CpG%:	0.098361
GC%:	0.612903
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=exon (NM_011707.2, exon 7 of 8)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_008759.2
 |nearest_refseq=
+|nearest_transcripts=
 |nearest_unigene=NM_008759
 |peak_score=1