TSS: Rfmm 118512.1: Difference between revisions

Revision as of 14:44, 13 November 2024

Basic information about the TSS

TSS ID:	rfmm_118512.1
Species:	mouse
Chr:	chr12

Start:	85752410
End:	85752448
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	dELS,CTCF-bound (EM10D1314449,EM10E0543667)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LOC115488082
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	12940
Nearest PromoterID:	XR_004937893.1
Entrez ID:	LOC115488082
Nearest Unigene:	XR_004937893
Nearest Refseq:
Nearest Ensembl:
Gene Name:	LOC115488082
Gene Alias:
Gene Type:
CpG%:	0.026316
GC%:	0.538462
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_016767.2, intron 2 of 2)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=XR_004937893.1
 |nearest_refseq=
+|nearest_transcripts=
 |nearest_unigene=XR_004937893
 |peak_score=1