TSS: Rfmm 121330.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=NM_010917.2:0 BC052939:0 ENSMUST00000005532.9:-29 LF199390:-30 MA434967:-30 AK144878:31 AK084876:55 AK166779:57 ENSMUST00000222142.2:58 AK041633:58 AK049585:58 X14480:72 BC131668:82 BC131669:82 X14194:82 LF235388:229 MA470965:229
|annotation=promoter-TSS (Gm7426)
|annotation=promoter-TSS (Gm7426)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_010917.2
|nearest_promoter_id=NM_010917.2
|nearest_refseq=
|nearest_refseq=
|nearest_transcripts=ENSMUST00000005532.9:-29 LF199390:-30 MA434967:-30 AK144878:31 AK084876:55 AK166779:57 ENSMUST00000222142.2:58 AK041633:58 AK049585:58 X14480:72 BC131668:82 BC131669:82 X14194:82 LF235388:229 MA470965:229
|nearest_unigene=NM_010917
|nearest_unigene=NM_010917
|peak_score=1
|peak_score=1
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|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=BC052939
|transcript_name=NM_010917.2 BC052939
|tss_cluster_detected=3
|tss_cluster_detected=3
|tss_id=rfmm_121330.1
|tss_id=rfmm_121330.1

Revision as of 15:29, 13 November 2024

Basic information about the TSS

TSS ID:rfmm_121330.1
TSS ID(Version3):mm_169036.1
Species:mouse
Chr:chr13
Start:13612165
End:13612194
Strand:+
Source datasetsDRA000914|GSE117655|PRJDB10397
ProtocolCAGE_and_CAGEscan|deepCAGE|C1CAGE
TSS cluster detected*3

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:PLS (EM10D2426616,EM10E1002070)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:NM_010917.2:0
BC052939:0
GeneID:18073
HGNC/MGI_ID:MGI:97342
UniProt_ID:
Nearer transcript ids and distances:
  • ENSMUST00000005532.9:-29
  • LF199390:-30
  • MA434967:-30
  • AK144878:31
  • AK084876:55
  • AK166779:57
  • ENSMUST00000222142.2:58
  • AK041633:58
  • AK049585:58
  • X14480:72
  • BC131668:82
  • BC131669:82
  • X14194:82
  • LF235388:229
  • MA470965:229
view more...
Gene_name:Nid1
Gene_symbol:Nid1
Gene_synonyms:entactin entactin-1 entactin_1 nidogen-1
Gene_source:MGI:97342



TATA-Box annotation

Distance to TSS:-8
Nearest PromoterID:NM_010917.2
Entrez ID:Nid1
Nearest Unigene:NM_010917
Nearest Refseq:
Nearest Ensembl:
Gene Name:Nid1
Gene Alias:
Gene Type:
CpG%:0.103448
GC%:0.766667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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