TSS: Rfmm 139294.1: Difference between revisions

Revision as of 20:17, 13 November 2024

Basic information about the TSS

TSS ID:	rfmm_139294.1
Species:	mouse
Chr:	chr15

Start:	89337902
End:	89337964
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS,CTCF-bound (EM10D2513051,EM10E1035730)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_021921.3:150
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENSMUST00000023291.6:152 AK158968:298 AF310135:369 BC029704:371 AF220195:435 AK014339:447 view more...

Gene_name:	Mapk8ip2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-181
Nearest PromoterID:	NM_021921.3
Entrez ID:	Mapk8ip2
Nearest Unigene:	NM_021921
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Mapk8ip2
Gene Alias:
Gene Type:
CpG%:	0.064516
GC%:	0.650794
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_021921.3:150 ENSMUST00000023291.6:152 AK158968:298 AF310135:369 BC029704:371 AF220195:435 AK014339:447
 |annotation=promoter-TSS (NM_021921.3)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_021921.3
 |nearest_refseq=
+|nearest_transcripts=ENSMUST00000023291.6:152 AK158968:298 AF310135:369 BC029704:371 AF220195:435 AK014339:447
 |nearest_unigene=NM_021921
 |peak_score=1