TSS: Rfmm 139569.1: Difference between revisions

Revision as of 20:21, 13 November 2024

Basic information about the TSS

TSS ID:	rfmm_139569.1
Species:	mouse
Chr:	chr15

Start:	96171216
End:	96171218
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AK047940:-19
GeneID:	319722
HGNC/MGI_ID:	MGI:2442603
UniProt_ID:
Nearer transcript ids and distances:	AK047346:-159

Gene_name:	E330033B04Rik
Gene_symbol:	E330033B04Rik
Gene_synonyms:
Gene_source:	MGI:2442603

TATA-Box annotation

Distance to TSS:	1939
Nearest PromoterID:	NR_030690.1
Entrez ID:	E330033B04Rik
Nearest Unigene:	NR_030690
Nearest Refseq:
Nearest Ensembl:
Gene Name:	E330033B04Rik
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=AK047940:-19 AK047346:-159
 |annotation=exon (NR_030690.1, exon 1 of 1)
 |ccre_category=N
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_030690.1
 |nearest_refseq=
+|nearest_transcripts=AK047346:-159
 |nearest_unigene=NR_030690
 |peak_score=1