TSS: Rfmm 146504.1: Difference between revisions

Revision as of 22:15, 13 November 2024

Basic information about the TSS

TSS ID:	rfmm_146504.1
Species:	mouse
Chr:	chr16

Start:	91169988
End:	91169999
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	pELS,CTCF-bound (EM10D2541992,EM10E1047375)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	Ifnar2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	309
Nearest PromoterID:	XM_011246100.4
Entrez ID:	Ifnar2
Nearest Unigene:	NM_001347258
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Ifnar2
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.416667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (XM_036159790.1, intron 1 of 7)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=XM_011246100.4
 |nearest_refseq=
+|nearest_transcripts=
 |nearest_unigene=NM_001347258
 |peak_score=1