TSS: Rfmm 147844.1: Difference between revisions

Revision as of 22:36, 13 November 2024

Basic information about the TSS

TSS ID:	rfmm_147844.1
Species:	mouse
Chr:	chr17

Start:	13980667
End:	13980688
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	pELS (EM10D2548969,EM10E1050366)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AK044118:30
GeneID:	102636844
HGNC/MGI_ID:	MGI:3802073
UniProt_ID:
Nearer transcript ids and distances:	ENSMUST00000155166.2:37 ENSMUST00000232858.2:321 ENSMUST00000129681.3:420 view more...

Gene_name:	Tcte2
Gene_symbol:	Gm16049
Gene_synonyms:
Gene_source:	MGI:3802073

TATA-Box annotation

Distance to TSS:	2
Nearest PromoterID:	XM_030249642.2
Entrez ID:	Tcte2
Nearest Unigene:	NM_022311
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Tcte2
Gene Alias:
Gene Type:
CpG%:	0.190476
GC%:	0.818182
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=AK044118:30 ENSMUST00000155166.2:37 ENSMUST00000232858.2:321 ENSMUST00000129681.3:420
 |annotation=promoter-TSS (NM_010806.1)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=XM_030249642.2
 |nearest_refseq=
+|nearest_transcripts=ENSMUST00000155166.2:37 ENSMUST00000232858.2:321 ENSMUST00000129681.3:420
 |nearest_unigene=NM_022311
 |peak_score=1