TSS: Rfmm 152415.1: Difference between revisions

Revision as of 23:50, 13 November 2024

Basic information about the TSS

TSS ID:	rfmm_152415.1
Species:	mouse
Chr:	chr17

Start:	45970239
End:	45970261
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000120717.8:0
GeneID:	268958
HGNC/MGI_ID:	MGI:1352490
UniProt_ID:	Q6J756
Nearer transcript ids and distances:	NM_001013767.2:4 AY578330:4 ENSMUST00000151350.2:16 BC153195:53 BC148637:53 view more...

Gene_name:	Capn11
Gene_symbol:	Capn11
Gene_synonyms:
Gene_source:	MGI:1352490

TATA-Box annotation

Distance to TSS:	-15
Nearest PromoterID:	NM_001013767.2
Entrez ID:	Capn11
Nearest Unigene:	XM_011246479
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Capn11
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.434783
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENSMUST00000120717.8:0 NM_001013767.2:4 AY578330:4 ENSMUST00000151350.2:16 BC153195:53 BC148637:53
 |annotation=promoter-TSS (NM_001013767.2)
 |ccre_category=N
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001013767.2
 |nearest_refseq=
+|nearest_transcripts=NM_001013767.2:4 AY578330:4 ENSMUST00000151350.2:16 BC153195:53 BC148637:53
 |nearest_unigene=XM_011246479
 |peak_score=1